Question
How to diagnose a DoS/DDoS attack and find websites under attack on a Plesk server?
Answer
On Linux
For real-time attack
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Connect to the server via SSH. 
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Determine the source IP addresses and numbers of the connections: # ss -tan state established | grep ":80|:443" | awk '{print $4}'| cut -d':' -f1 | sort -n | uniq -c | sort -nr 
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Find the domains which are currently under attack: # for log in /var/www/vhosts/system/*/logs/*access*log; do echo -n "$log "; tail -n10000 "$log" | grep -c 203.0.113.2; done | sort -n -k2 
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Check the number of connections in SYN_RECV state (possible syn-flood): # ss -tan state syn-recv | wc -l 
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If there are several IP addresses in Plesk, determine the target IP address under attack: # netstat -lpan | grep SYN_RECV | awk '{print $4}' | cut -d: -f1 | sort | uniq -c | sort -nk 1 
It is possible that there are not many established connections to the web server, however, there might be a lot of requests that were successfully served by nginx and transferred to Apache and at this point, Apache is under attack. To track these requests do the following:
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Navigate to /var/www/vhosts/system:# cd /var/www/vhosts/system 
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Generate a file requeststo fetch the number of requests that were made in the last hour using the command below.Note: As an example, 24/Jan/2022:20 will be used. Here ":20" is 8 p.m. # for i in *;do echo -n "$i "; grep '24/Jan/2022:20' $i/logs/access_ssl_log | awk '{print $1}' | wc -l;done > ~/requests 
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Check the generated file: # cat ~/requests | sort -k 2 -r -n | head 
 example.com 24549
 example.net 18545
 test.com 3
For finished attack
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Connect to the server via SSH. 
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Create an environment for investigation: # mkdir /root/inv 
 # cd /var/www/vhosts/system
 # for i in *; do mkdir /root/inv/$i; done
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Populate the environment with log files for the last few days: # for i in *; do find $i -mtime -3 -type f -exec cp -a {} /root/inv/$i ;; done 
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Unzip processed log-files: # cd /root/inv 
 # for i in /root/inv/*/*; do [[ ${i:(-3)} == ".gz" ]] && gunzip $i ; done
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Remove statistics and configuration files: # rm /root/inv/*/*.conf /root/inv/*/*.png /root/inv/*/*webalizer* /root/inv/*/*webstat */*html 
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Get entries from the day of attack to form a report: Note: As an example, 30/Oct/2017 will be used. # for i in *; do [[ -d $i ]] && grep -rh "[30/Oct/2017" ./$i > $i.accessed; done 
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Sort the entries by size: # ls -laS | less Note: A size of a log file will be displayed. The higher the size of a log-file, the higher is the chance of it being targeted. 
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Find the most used IP addresses: # cut -f 1 -d ' ' *.accessed | sort -n | uniq -c | sort -nr | less Note: This command displays how many attempts to access a website each IP address performed in a time-frame specified on step 6. 
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Find the domains which were targeted by these IP addresses: # grep -rc 203.0.113.2 /root/inv/*/* | sort -n -k2 -t: